Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs13355409 | chr5:76868720 | C/T | 7.82E-7 | 408 | 16.27 | 16.83 | 4.3 | KM Plot |
| HNSC | rs1348935 | chr3:63054705 | T/A | 7.08E-5 | 402 | 14.68 | 19.28 | 16.62 | KM Plot |
| HNSC | rs1350669 | chr5:76859641 | G/T | 1.04E-6 | 407 | 16.27 | 19.07 | 4.3 | KM Plot |
| HNSC | rs137133 | chr22:43021607 | C/T | 1.57E-5 | 391 | 16.47 | 18.8 | 5.03 | KM Plot |
| HNSC | rs138950333 | chr1:38089517 | C/T | 5.67E-5 | 411 | 16.33 | 16.23 | 4.73 | KM Plot |
| HNSC | rs140319695 | chr12:120907150 | C/G | 2.42E-5 | 407 | 16.17 | 19.07 | 7.27 | KM Plot |
| HNSC | rs143446762 | chr20:44435674 | C/CT | 3.77E-7 | 406 | 16.35 | 16.43 | 9.13 | KM Plot |
| HNSC | rs144102086 | chr1:38088182 | C/CA | 3.96E-5 | 410 | 16.3 | 16.23 | 4.73 | KM Plot |
| HNSC | rs1447433 | chr3:63051364 | A/G | 4.45E-5 | 406 | 14.78 | 19.17 | 16.87 | KM Plot |
| HNSC | rs1448774 | chr9:22750629 | C/T | 1.23E-14 | 412 | 16.33 | 13.93 | 2.13 | KM Plot |
| HNSC | rs145020733 | chr7:76218407 | A/G | 1.11E-10 | 410 | 16.37 | 14.77 | 3.95 | KM Plot |
| HNSC | rs146151725 | chr1:173819948 | G/A | 2.38E-6 | 410 | 16.87 | 14.65 | 3.73 | KM Plot |
| HNSC | rs146154291 | chr1:38086218 | A/G | 5.89E-5 | 410 | 16.3 | 16.23 | 4.73 | KM Plot |
| HNSC | rs146661555 | chr22:24527195 | TCTC/T | 2.12E-6 | 411 | 16.33 | 17.07 | 8.63 | KM Plot |
| HNSC | rs1472845 | chr1:212913125 | T/C | 5.44E-5 | 412 | 16.07 | 19.23 | 5.03 | KM Plot |